Package: OTUtable 1.1.2

OTUtable: North Temperate Lakes - Microbial Observatory 16S Time Series Data and Functions

Analyses of OTU tables produced by 16S rRNA gene amplicon sequencing, as well as example data. It contains the data and scripts used in the paper Linz, et al. (2017) "Bacterial community composition and dynamics spanning five years in freshwater bog lakes," <doi:10.1128/mSphere.00169-17>.

Authors:Alexandra Linz

OTUtable_1.1.2.tar.gz
OTUtable_1.1.2.zip(r-4.7)OTUtable_1.1.2.zip(r-4.6)OTUtable_1.1.2.zip(r-4.5)
OTUtable_1.1.2.tgz(r-4.6-any)OTUtable_1.1.2.tgz(r-4.5-any)
OTUtable_1.1.2.tar.gz(r-4.7-any)OTUtable_1.1.2.tar.gz(r-4.6-any)
OTUtable_1.1.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
OTUtable/json (API)

# Install 'OTUtable' in R:
install.packages('OTUtable', repos = c('https://amlinz.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • metadata - Lake metadata for OTU table
  • otu_table - OTU table generated from 8 bog lakes over 4 years
  • taxonomy - Taxonomic assignments of OTUs

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.32 score 70 scripts 196 downloads 3 mentions 20 exports 0 dependencies

Last updated from:a15e4506ce. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK107
source / vignettesOK157
linux-release-x86_64OK107
macos-release-arm64OK121
macos-oldrel-arm64OK148
windows-develOK76
windows-releaseOK66
windows-oldrelOK66
wasm-releaseOK90

Exports:bog_subsetchao1clean_mothur_taxonomyclean_sharedclean_TaxAss_taxonomycombine_otusextract_datefilter_taxagrab_groupmake_do_matrixmake_temp_matrixobs_richnesspielouplot_columnreduce_namesremove_repsrotateshannonyear_subsetzscore

Dependencies: