Package: OTUtable 1.1.2

OTUtable: North Temperate Lakes - Microbial Observatory 16S Time Series Data and Functions

Analyses of OTU tables produced by 16S rRNA gene amplicon sequencing, as well as example data. It contains the data and scripts used in the paper Linz, et al. (2017) "Bacterial community composition and dynamics spanning five years in freshwater bog lakes," <doi:10.1128/mSphere.00169-17>.

Authors:Alexandra Linz

OTUtable_1.1.2.tar.gz
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OTUtable_1.1.2.tgz(r-4.4-any)OTUtable_1.1.2.tgz(r-4.3-any)
OTUtable_1.1.2.tar.gz(r-4.5-noble)OTUtable_1.1.2.tar.gz(r-4.4-noble)
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OTUtable.pdf |OTUtable.html✨
OTUtable/json (API)

# Install 'OTUtable' in R:
install.packages('OTUtable', repos = c('https://amlinz.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • metadata - Lake metadata for OTU table
  • otu_table - OTU table generated from 8 bog lakes over 4 years
  • taxonomy - Taxonomic assignments of OTUs

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.20 score 53 scripts 154 downloads 3 mentions 20 exports 0 dependencies

Last updated 7 years agofrom:a15e4506ce. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-winOKOct 31 2024
R-4.5-linuxOKOct 31 2024
R-4.4-winOKOct 31 2024
R-4.4-macOKOct 31 2024
R-4.3-winOKOct 31 2024
R-4.3-macOKOct 31 2024

Exports:bog_subsetchao1clean_mothur_taxonomyclean_sharedclean_TaxAss_taxonomycombine_otusextract_datefilter_taxagrab_groupmake_do_matrixmake_temp_matrixobs_richnesspielouplot_columnreduce_namesremove_repsrotateshannonyear_subsetzscore

Dependencies: