Package: OTUtable 1.1.2

OTUtable: North Temperate Lakes - Microbial Observatory 16S Time Series Data and Functions

Analyses of OTU tables produced by 16S rRNA gene amplicon sequencing, as well as example data. It contains the data and scripts used in the paper Linz, et al. (2017) "Bacterial community composition and dynamics spanning five years in freshwater bog lakes," <doi:10.1128/mSphere.00169-17>.

Authors:Alexandra Linz

OTUtable_1.1.2.tar.gz
OTUtable_1.1.2.zip(r-4.7-any)OTUtable_1.1.2.zip(r-4.6-any)OTUtable_1.1.2.zip(r-4.5-any)
OTUtable_1.1.2.tgz(r-4.6-any)OTUtable_1.1.2.tgz(r-4.5-any)
OTUtable_1.1.2.tar.gz(r-4.7-any)OTUtable_1.1.2.tar.gz(r-4.6-any)
OTUtable_1.1.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
OTUtable/json (API)

# Install 'OTUtable' in R:
install.packages('OTUtable', repos = c('https://amlinz.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • metadata - Lake metadata for OTU table
  • otu_table - OTU table generated from 8 bog lakes over 4 years
  • taxonomy - Taxonomic assignments of OTUs

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.30 score 66 scripts 169 downloads 3 mentions 20 exports 0 dependencies

Last updated from:a15e4506ce. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK102
source / vignettesOK141
linux-releaseOK107
macos-releaseOK142
macos-oldrelOK177
windows-develOK61
windows-releaseOK61
windows-oldrelOK46
wasm-releaseOK95

Exports:bog_subsetchao1clean_mothur_taxonomyclean_sharedclean_TaxAss_taxonomycombine_otusextract_datefilter_taxagrab_groupmake_do_matrixmake_temp_matrixobs_richnesspielouplot_columnreduce_namesremove_repsrotateshannonyear_subsetzscore

Dependencies: